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Introduction to Perl and BioPerl

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Introduction to Perl and BioPerl

Introduction to Perl and BioPerl

This note explains the following topics: Perl program structure, Variable types, Scalars , Pragmas , Operators , Arrays , Hashes , Control structures, Loop modifers, Subroutines , Reading and Writing a file, Filehandles , Regular expressions, Regex anchors and operators, Running perl, POD tools, What is Bioperl, Gotchas , Objects in Perl, Interfaces and Inheritance in Bioperl, Bioperl components, Parse a sequence from file, output, Read in sequence and write out in different format, Sequence Databases.

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