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Bioinformatics methods and applications for functional analysis of mass spectrometry based proteomics data
This book is intended to serve both as a textbook for short bioinformatics courses and as a base for a self teaching endeavor. It is divided in two parts: A. Bioinformatics Techniques and B. Case Studies. Each chapter of the first part addresses a specific problem in bioinformatics and consists of a theoretical part and of a detailed tutorial with practical applications of that theory using software freely available on the Internet.
Author(s): Chanchal Kumar
197 Pages 
A Bioinformatics Study of Human Transcriptional Regulation
This PDF thesis A Bioinformatics Study of Human Transcriptional Regulation covers the following topics related to Bioinformatics : Biological background, DNA and chromosomes, Transcription, Transcriptional regulation, Medical aspects of transcriptional regulation, High-throughput technologies, DNA microarrays, Massively parallel sequencing, Biological knowledge sources, Annotations, Experimental data, Aims, Methods, Computational methods, Statistics Randomization, Local search, Analysis of high-throughput data, Experiment design, Expression analysis, ChIP-chip data analysis, ChIP-seq data analysis, Data storage and management, Results and discussion, Summary of results, Computational results, Biological results, Medical results, Additional results, Discussion.
Author(s): Adam Ameur
54 Pages
Bioinformatics Introduction by Mark Gerstein
This note covers the following topics: Molecular Biology, Molecular Biology Information - DNA, Protein Sequence, Macromolecular Structure and Protein Structure Details, Gene Expression Datasets, New Paradigm for Scientific Computing, General Types of Informatics in Bioinformatics, Genome Sequence, Protein Sequence, Major Application: Designing Drugs, Finding Homologues, Genome Characterization.
Author(s): Mark Gerstein
NA Pages
Bioinformatics Sequence Analysis and Phylogenetics Lecture Notes (PDF 190P)
This book covers the following topics: biological basics needed in bioinformatics, Pairwise Alignment, Multiple Alignment, Phylogenetics, DNA, RNA, Transcription, Introns, Exons, and Splicing, Amino Acids.
Author(s): Sepp Hochreiter
180 Pages
Algorithms in Bioinformatics (PDF 175p)
This note explains the relationship between biology, bioinformatics and computer science and shows the computational approaches used in bioinformatics.
Author(s): Marcel Turcotte
175 Pages
Online Lectures on Bioinformatics
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Basic bioinformatics concepts, databases and tools
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Bioinformatics, Sequence and Structural Alignment
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BIOINFORMATICS lecture Notes Online
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