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Algorithmic Mass Spectrometry
This advanced PDF explores mass spectrometry from the computational and algorithmic perspective. Peptide de novo sequencing, database searching, and comparing mass spectra using significance testing, such as p-values and E-values, are discussed in this note. It also covers isotope distributions and fragmentation patterns to shed light on the mathematical aspects behind its analysis of mass spectrometry data. It reaches more complex dimensions and discusses issues like glycan sequencing, machine learning, and decomposition of the isotope pattern. Finally, the note is an invaluable resource for anyone interested in mass spectrometry and computational methods, providing a foundation for yet more complicated applications in bioinformatics and structural biology.
Author(s): Sebastian Bocker
253 Pages 
This is a comprehensive note on X-ray spectroscopy techniques, aimed at detailing their applications in different fields, with an emphasis on the special applications in nanoparticles and molecular mechanisms. It begins with the introduction of XRF processes and techniques followed by high-resolution X-ray spectroscopy using compound semiconductor detectors and digital pulse processing systems. It also includes analytic applications of X-ray techniques, including dispersive X-ray spectroscopy as well as quantification in X-ray fluorescence spectrometry. In addition, it approaches specialized uses such as time-resolved X-ray absorption spectroscopy in the study of metalloproteins and the application of soft X-rays in astrochemistry. The note concludes discussing nanoscale chemical analysis that highlights energy dispersive X-ray spectroscopy (EDX) and transmission electron microscopy (TEM) with relevance to the characterization of interfaces and materials on the nanoscale.
Author(s): Shatendra K. Sharma
290 Pages
Mass Spectrometry by Prof. Peter B. OConnor
Prof. Peter B. O'Connor's note on mass spectrometry. It deals with the interpretation of mass spectra; it would be particularly useful for any persons undertaking the analysis of unknown samples. It starts by dealing with a range of techniques, among them being electron impact ionization, MS/MS fragmentation, and ion sources. In addition, the note goes into practical implementations of mass spectrometry in real-world applications such as protein complex analysis, hydrogen and deuterium exchange, and imaging mass spectrometry. The course takes the student through advanced topics like 2D FTICR mass spectrometry, an expansive full view of modern mass spectrometric methods and their practical use in research and industry.
Author(s): Prof. Peter B. OConnor
NA Pages